For what it's worth, I fly the 747. I don't know a single pilot flying the airplane who believes the official version, and everyone I know, myself included, firmly believes the flight was hit by a MANPAD.
I know an individual who just retired out of the Classic who lost his son and wife in TWA-800. In fact, it's the reason he began flying the 747; he felt it was something he had to do to come to terms with the loss, sort of like getting back on the horse. There's no doubt in his mind either regarding the cause.
We have an applicable operational AD involving the center wing fuel tank with specific requirements about minimum fuel in the tank if the CWT fuel boost override pumps are to be used, and exactly how much fuel we can use, and when. Nobody, whether it's the maintenance staff, flight training department, or crews believes there's an issue with wiring or pumps. That was never the issue.
I've often thought about TWA 800 while climbing out of JFK going north toward the Tracks. Even today if we end up going out close to El Al, someone will comment "uh-oh."
The official song and dance was so full of holes, for anyone that knows the airplane, that it's patently obvious and quite transparent. TWA 800 was shot down. I'm not going to discuss conspiracy theories because it's irrelevant; there's no "conspiracy." Most certainly there was an official story and then there's the truth, but there's a reason behind that. The reason is no longer that significant in light of changing times, and the official report is never going to be altered, but those operating the aircraft with experience in type and who know the circumstances surrounding the event put zero credence in the popular, official account. It's just not true.