The video is revealing, but only part of the whole bigger scenario. You have to read through all the stuff in the docket to get the whole picture.
Basically it starts with a relatively typical Brown Field day. Trainee controller working the pattern with a qualified Sup overseeing it. Traffic starts to pick up to a point where there are 9 aircraft in the Class D (not uncommon for nearby MYF, but more than normal for SDM).
Trainee is doing a decent job, but starting to get overwhelmed. 85U was originally cleared for right traffic touch and go on 26R, but they shifted him to 26L (this happened before that video starts). Here's the kicker: unless I missed it, when they cleared him for 26L, they never gave him instructions for which way to go. 26L is left traffic, but they never told him whether to stay in the left pattern or go back to the right. He (85U) went right. At some point around then, when the Sup noticed that the Trainee was getting overwhelmed and making mistakes, he took over. That transition happened at a very critical time and they lost the bubble.
I think Tower assumed 85U stayed in the left pattern and forgot about him. I suspect that when they saw the conflict with Eagle 1, the controller assumed it was 6ZP and then realized the mistake (too late at that point). Sadly, this accident setup was very similar to PSA 182.