You bring up a good point, Todd. You are correct, but you might want to check FAA Order 8130.2H which says that for special airworthiness certificates, the FAA may impose conditions such as...
Depending on the intended operation, the applicable reference would be § 91.205(b) for VFR (day); § 91.205(c) for VFR (night); and § 91.205(d) for instrument flight rules (IFR). Operators should be alerted that there are specific requirements under part 91 for maintenance and inspection of the various aircraft instruments, and that those requirements are applicable for these aircraft if the instruments are installed, for example, §§ 91.173 through 91.187, 91.215, 91.217, 91.219, 91.411, 91.413, etc.
So I guess the question is, are you aware of any e-AB special airworthiness certificates that do not include 91.205 equipment for the applicable type of 0peration within the NAS?