With regards to the reference, the controller may be required to coordinate the transition IF the transition is required. Now consider this - if you are receiving VFR radar advisories, unless you have been given an altitude to maintain, the altitude you fly is generally up to pilot's discretion. If you are flying over a class D airport and let's say you descend to maintain cloud clearance, but you don't tell the controller what you are doing and that controller is busy at the moment with IFR traffic, you have just busted the class D below you and it is 100 percent YOUR fault - not the controller's.