If I ever see a screen boot up with Windows on any plane I'm flying, I'm turning off the master switch and getting out. It would give the "Blue screen of death" a whole new meaning. No way, no how!
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Probably not Windoz, but the Boeing 777 and several Airbus models are flown by computers, albeit triply redundant ones. If the computers fail, the aircraft falls. So check your specs before you board. And there have been several computer 'malfunctions' which have resulted in crashes, notably the new Airbus being demonstrated at the Paris Air Show several year's ago which went down in the woods with some VIPs on board as I recall. Then there was the China Airlines Airbus that went into an apartment building on approach, and many more.