They have now replaced both G5s and the wiring to the GAD29B and it is still acting the same.
Garmin has seen our wiring diagram and says it is correct as are the settings in the G5 configuration.
They have a Comanche in the shop with the same setup as mine (STEC-30, dual G5s, GAD29B, 750). A different avionics guy has been doing that install and it should be ready to fly tomorrow. If it works correctly, then they have something to compare mine to. If it behaves the same, then there is some common problem in the configuration.
They have done other similar installs with an STEC-50, but mine and the Comanche are the first with STEC-30s.