Those engines were spec'd for anything from 87 octane (which was what was available when the first B-17's flew) up to the high octane stuff the big iron used into the '70's. Obviously, you can't run as much boost with 87 or 100 octane as with the 140 (?) octane or with 100/130, but WWII was mostly fought running 100 octane fuel. The really high octane stuff was for the fighters to eke out the last few MPH. On bombers, they were a little more concerned with engine longevity than to push them that hard.
As I understand it, the turbos on the Collings (and EAA and...) B-17's are not used. I don't know what plumbing changes were made to do that. But I imagine (don't know) that the engines they were using had integral superchargers (like the R-1820's on DC-3's and C-47's do) to provide some level of additional boost. Looking at DC-3 power charts I found online, it appears that you could probably run 38-40" of MP in these engines with 100LL, and at 2700 rpm, you'd have ~1,000 HP engines. I would consider this directional, rather than precise information.
There's gotta be someone around here with the experience to share the actual numbers.